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MolNFT v1 · #9959 · protein

Structure and mechanism of interleukin-1BETA converting enzyme

1ICE · Interleukin-1 beta converting enzyme: “Structure and mechanism of interleukin-1BETA converting enzyme”. X-ray diffraction, 1 ligand (ACE). MolNFT v1 #9959 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB
1ICE
Type
protein
Length
259 residues
Chains
3
Method
x-ray diffraction
Collection
MolNFT v1 / PDB
Contract
0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner
0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule
Interleukin-1 beta converting enzyme; Tetrapeptide aldehyde
EC
3.4.22.36
UniProt
P29466
Ligands
ACE

Structure

x-ray diffraction · 3 distinct chains · 32% helix, 19% strand (DSSP).

ChainMoleculeTypeResiduesSecondary structureUniProt
AInterleukin-1 beta converting enzyme (EC 3.4.22.36)protein16735% helix, 20% strandP29466
TTetrapeptide aldehydeprotein40% helix, 50% strand—
BInterleukin-1 beta converting enzyme (EC 3.4.22.36)protein8830% helix, 17% strandP29466

Ligands and binding sites

  • ACE · Acetyl group · ligand · chains T, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Interfaces

3 interfaces between chains.

  • A–B · 2680 Ų buried · 45 hydrogen bonds · protein-protein
  • T–B · 379 Ų buried · 6 hydrogen bonds · protein-protein
  • A–T · 151 Ų buried · 5 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 1 covalent, 1 disulfide, 1 modified (covalent ligand, disulfide, nonstandard).

Compared structures

  • 1ICE · Structure and mechanism of interleukin-1BETA converting enzyme · the same entry in another collection · chain A against A, TM-score 1.00
  • P29466 · AlphaFold monomer V2.0 prediction for caspase-1 (P29466) · a predicted model of the same protein · chain B against A, TM-score 0.97

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