MolNFT v1 · #99393 · protein
Crystal structure of the endo-1,4-glucanase, RBCEL1, in complex with cellobiose
4M24 · Endoglucanase: “Crystal structure of the endo-1,4-glucanase, RBCEL1, in complex with cellobiose”. X-ray diffraction, 1 ligand (BGC), 1 pocket (best druggability 0.45). MolNFT v1 #99393 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4M24
- Type
- protein
- Length
- 321 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Endoglucanase
- EC
- 3.2.1.4
- UniProt
- C1JI15
- Ligands
- BGC
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Endoglucanase (EC 3.2.1.4) | protein | 321 | 36% helix, 16% strand | C1JI15 |
Ligands and binding sites
- BGC · beta-D-glucopyranose · sugar · 2 copies · chains A
- TRS · 2-amino-2-hydroxymethyl-propane-1,3-diol · additive · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 173 | 0.45 | 0.75 | 36 | BGC |
Modifications
Observed in the structure: 1 disulfide (disulfide).
Compared structures
- 4M24 · Crystal structure of the endo-1,4-glucanase, RBcel1, in complex with cellobiose · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt C1JI15
- Elsewhere: RCSB PDB 4M24 · PDBe 4M24 · UniProt C1JI15
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