MolNFT v1 · #99336 · protein
Crystal structure of a putative anti-sigma factor (BDI_1681) from parabacteroides distasonis atcc 8503 at 2.50 a resolution
4M0H · Conserved hypothetical protein, putative anti-sigma factor: “Crystal structure of a putative anti-sigma factor (BDI_1681) from parabacteroides distasonis atcc 8503 at…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability…
- PDB
- 4M0H
- Type
- protein
- Length
- 429 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical protein, putative anti-sigma factor
- UniProt
- A6LCL9
- Ligands
- CL
- Pockets
- 2 · best druggability 0.83
Structure
x-ray diffraction · 2 distinct chains · 15% helix, 47% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Conserved hypothetical protein, putative anti-sigma factor | protein | 216 | 15% helix, 47% strand | A6LCL9 |
| B | Conserved hypothetical protein, putative anti-sigma factor | protein | 213 | 15% helix, 47% strand | A6LCL9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 714 | 0.83 | 0.87 | 90 | empty |
| 2 | 65 | 0.34 | 0.77 | 18 | empty |
Interfaces
1 interface between chains.
- A–B · 661 Ų buried · 12 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 14 modified (engineered).
Compared structures
- 4M0H · Crystal structure of a putative anti-sigma factor (BDI_1681) from Parabacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6LCL9
- Elsewhere: RCSB PDB 4M0H · PDBe 4M0H · UniProt A6LCL9
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