MolNFT v1 · #99234 · protein

Crystal structure of DXNB2, a carbon - carbon bond hydrolase from sphingomonas wittichii RW1

4LXG · Mcp hydrolase: “Crystal structure of DXNB2, a carbon - carbon bond hydrolase from sphingomonas wittichii RW1”. X-ray diffraction, 1 ligand (SO4), 2 pockets (best druggability 0.73). MolNFT v1 #99234 on GenesisL1: 3D structure…

PDB: 4LXG
Type: protein
Length: 274 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Mcp hydrolase
EC: 3.7.1.8
UniProt: A5VAT9
Ligands: SO4
Pockets: 2 · best druggability 0.73

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Mcp hydrolase (EC 3.7.1.8)	protein	274	43% helix, 19% strand	A5VAT9

Ligands and binding sites

SO4 · Sulfate ion · ion · 3 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	302	0.73	0.86	51	SO4
2	52	0.32	0.77	16	empty

Compared structures

4LXG · Crystal structure of DxnB2, a carbon - carbon bond hydrolase from Sphingomonas wittichii… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A5VAT9
Elsewhere: RCSB PDB 4LXG · PDBe 4LXG · UniProt A5VAT9

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