MolNFT v1 · #99118 · protein

Crystal structure of the uncharacterized maf protein ycef from E. COLI, mutant D69A

4LU1 · Maf-like protein ycef: “Crystal structure of the uncharacterized maf protein ycef from E. COLI, mutant D69A”. X-ray diffraction, 1 ligand (UNX), 3 pockets (best druggability 0.60). MolNFT v1 #99118 on GenesisL1: 3D structure…

PDB: 4LU1
Type: protein
Length: 369 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Maf-like protein ycef
UniProt: C9QYM5
Ligands: UNX
Pockets: 3 · best druggability 0.60

Structure

x-ray diffraction · 2 distinct chains · 34% helix, 27% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Maf-like protein ycef	protein	191	34% helix, 27% strand	C9QYM5
B	Maf-like protein ycef	protein	178	35% helix, 28% strand	C9QYM5

Ligands and binding sites

UNX · Unknown atom or ion · ion · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	177	0.60	0.82	27	empty
2	345	0.59	0.76	33	empty
3	180	0.44	0.74	27	empty

Interfaces

1 interface between chains.

A–B · 1431 Å² buried · 20 hydrogen bonds · protein-protein

Compared structures

4LU1 · Crystal structure of the uncharacterized Maf protein YceF from E. coli, mutant D69A · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C9QYM5
Elsewhere: RCSB PDB 4LU1 · PDBe 4LU1 · UniProt C9QYM5

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