MolNFT v1 · #99081 · protein
Crystal structure of copper-bound L66S mutant toxin from helicobacter pylori
4LSY · Uncharacterized protein, toxin: “Crystal structure of copper-bound L66S mutant toxin from helicobacter pylori”. X-ray diffraction, 1 ligand (CU), 1 pocket (best druggability 0.54). MolNFT v1 #99081 on GenesisL1: 3D structure…
- PDB
- 4LSY
- Type
- protein
- Length
- 176 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Uncharacterized protein, toxin
- UniProt
- O25554
- Ligands
- CU
- Pockets
- 1 · best druggability 0.54
Structure
x-ray diffraction · 1 distinct chain · 38% helix, 32% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Uncharacterized protein, toxin | protein | 88 | 38% helix, 32% strand | O25554 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.54 | 0.79 | 32 | FLC, CU |
Interfaces
1 interface between chains.
- A–B · 415 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4LSY · Crystal structure of copper-bound L66S mutant toxin from Helicobacter pylori · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25554
- Elsewhere: RCSB PDB 4LSY · PDBe 4LSY · UniProt O25554
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