MolNFT v1 · #98955 · protein

Crystal structure of cyay protein from psychromonas ingrahamii in complex with EU(III)

4LP1 · Protein cyay: “Crystal structure of cyay protein from psychromonas ingrahamii in complex with EU(III)”. X-ray diffraction, 1 ligand (EU3), 1 pocket (best druggability 0.60). MolNFT v1 #98955 on GenesisL1: 3D structure, binding sites…

PDB: 4LP1
Type: protein
Length: 208 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Protein cyay
UniProt: A1SR01
Ligands: EU3
Pockets: 1 · best druggability 0.60

Structure

x-ray diffraction · 1 distinct chain · 37% helix, 35% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Protein cyay	protein	104	37% helix, 35% strand	A1SR01

Ligands and binding sites

EU3 · Europium (III) ion · metal · 9 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	362	0.60	0.77	53	EU3

Interfaces

1 interface between chains.

A–B · 355 Å² buried · 2 hydrogen bonds · protein-protein

Compared structures

4LP1 · Crystal structure of CyaY protein from Psychromonas ingrahamii in complex with Eu(III) · the same entry in another collection · chain A against A, TM-score 1.00
A1SR01 · AlphaFold monomer V2.0 prediction for iron-sulfur cluster assembly protein cyay (A1SR01) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A1SR01
Elsewhere: RCSB PDB 4LP1 · PDBe 4LP1 · UniProt A1SR01

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