MolNFT v1 · #98891 · protein
Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (BAMB_6123), target efi-510059, with bound glycerol and chloride ion
4LN5 · Trap dicarboxylate transporter, dctp subunit: “Crystal structure of a trap periplasmic solute binding protein from burkholderia ambifaria (BAMB_6123)…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.64). MolNFT v1…
- PDB
- 4LN5
- Type
- protein
- Length
- 302 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trap dicarboxylate transporter, dctp subunit
- UniProt
- Q0B2F6
- Ligands
- CL
- Pockets
- 2 · best druggability 0.64
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trap dicarboxylate transporter, dctp subunit | protein | 302 | 52% helix, 19% strand | Q0B2F6 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 58 | 0.64 | 0.94 | 20 | CL, GOL |
| 2 | 72 | 0.32 | 0.75 | 12 | empty |
Compared structures
- 4LN5 · Crystal structure of a trap periplasmic solute binding protein from burkholderia… · the same entry in another collection · chain A against A, TM-score 1.00
- Q0B2F6 · AlphaFold monomer V2.0 prediction for solute-binding protein BAMB_6123 (Q0B2F6) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q0B2F6
- Elsewhere: RCSB PDB 4LN5 · PDBe 4LN5 · UniProt Q0B2F6
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