MolNFT v1 · #98877 · protein
Crystal structure of L-lactate dehydrogenase from bacillus cereus atcc 14579, nysgrc target 029452
4LMR · L-lactate dehydrogenase 1: “Crystal structure of L-lactate dehydrogenase from bacillus cereus atcc 14579, nysgrc target 029452”. X-ray diffraction, 8 pockets (best druggability 0.69). MolNFT v1 #98877 on GenesisL1: 3D structure…
- PDB
- 4LMR
- Type
- protein
- Length
- 624 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- L-lactate dehydrogenase 1
- EC
- 1.1.1.27
- UniProt
- Q81EP4
- Pockets
- 8 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 50% helix, 20% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | L-lactate dehydrogenase 1 (EC 1.1.1.27) | protein | 312 | 50% helix, 20% strand | Q81EP4 |
Pockets
8 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 534 | 0.69 | 0.79 | 54 | empty |
| 2 | 384 | 0.61 | 0.77 | 47 | empty |
| 3 | 56 | 0.35 | 0.78 | 15 | empty |
| 4 | 86 | 0.34 | 0.74 | 16 | empty |
| 5 | 51 | 0.33 | 0.78 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 2228 Ų buried · 32 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 4LMR · Crystal structure of L-lactate dehydrogenase from Bacillus cereus ATCC 14579, NYSGRC… · the same entry in another collection · chain A against A, TM-score 1.00
- Q81EP4 · AlphaFold monomer V2.0 prediction for L-lactate dehydrogenase 1 (Q81EP4) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q81EP4
- Elsewhere: RCSB PDB 4LMR · PDBe 4LMR · UniProt Q81EP4
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