MolNFT v1 · #98842 · protein
Structure of redesigned IGG1 first constant and lambda domains (CH1:CLAMBDA constant redesign 2 beta, CRD2B) at 1.42A
4LLQ · Mutated CH1: “Structure of redesigned IGG1 first constant and lambda domains (CH1:CLAMBDA constant redesign 2 beta, CRD2B)…”. X-ray diffraction, 2 pockets (best druggability 0.46). MolNFT v1 #98842 on GenesisL1: 3D structure…
- PDB
- 4LLQ
- Type
- protein
- Length
- 200 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mutated CH1; Mutated light chain clambda
- UniProt
- Q6MZQ6, Q6PJR7
- Pockets
- 2 · best druggability 0.46
Structure
x-ray diffraction · 2 distinct chains · 10% helix, 54% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mutated CH1 | protein | 99 | 9% helix, 55% strand | Q6MZQ6 |
| B | Mutated light chain clambda | protein | 101 | 11% helix, 53% strand | Q6PJR7 |
Ligands and binding sites
- PG6 · 1-(2-methoxy-ethoxy)-2-{2-[2-(2-methoxy-ethoxy]-ethoxy}-ethane · additive · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 123 | 0.46 | 0.79 | 27 | empty |
| 2 | 81 | 0.33 | 0.74 | 21 | empty |
Interfaces
1 interface between chains.
- A–B · 872 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4LLQ · Structure of redesigned IgG1 first constant and lambda domains (CH1:Clambda constant… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q6MZQ6
- Every structure of UniProt Q6PJR7
- Elsewhere: RCSB PDB 4LLQ · PDBe 4LLQ · UniProt Q6MZQ6 · UniProt Q6PJR7
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