MolNFT v1 · #98810 · protein

Crystal structure of deod-3 gene product from shewanella oneidensis mr-1, nysgrc target 029437

4LKR · Purine nucleoside phosphorylase deod-type: “Crystal structure of deod-3 gene product from shewanella oneidensis mr-1, nysgrc target 029437”. X-ray diffraction, 1 pocket (best druggability 0.55). MolNFT v1 #98810 on GenesisL1: 3D…

PDB: 4LKR
Type: protein
Length: 233 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Purine nucleoside phosphorylase deod-type
EC: 2.4.2.1
UniProt: Q8EDM4
Pockets: 1 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 28% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Purine nucleoside phosphorylase deod-type (EC 2.4.2.1)	protein	233	35% helix, 28% strand	Q8EDM4

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	311	0.55	0.75	38	empty

Modifications

Observed in the structure: 10 modified (engineered).

Compared structures

4LKR · Crystal structure of deoD-3 gene product from Shewanella oneidensis MR-1, NYSGRC target… · the same entry in another collection · chain A against A, TM-score 1.00
Q8EDM4 · AlphaFold monomer V2.0 prediction for purine nucleoside phosphorylase deod-type (Q8EDM4) · a predicted model of the same protein · chain A against A, TM-score 0.96

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8EDM4
Elsewhere: RCSB PDB 4LKR · PDBe 4LKR · UniProt Q8EDM4

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