MolNFT v1 · #98773 · protein
Structural insights into the unique single-stranded DNA binding mode of DNA processing protein a from helicobacter pylori
4LJL · DNA processing chain a (dpra): “Structural insights into the unique single-stranded DNA binding mode of DNA processing protein a from…”. X-ray diffraction, 3 pockets (best druggability 0.57). MolNFT v1 #98773 on GenesisL1: 3D…
- PDB
- 4LJL
- Type
- protein
- Length
- 438 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- DNA processing chain a (dpra)
- UniProt
- O25100
- Pockets
- 3 · best druggability 0.57
Structure
x-ray diffraction · 1 distinct chain · 42% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| B, A | DNA processing chain a (dpra) | protein | 219 | 42% helix, 16% strand | O25100 |
Pockets
3 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 146 | 0.57 | 0.82 | 27 | empty |
| 2 | 130 | 0.56 | 0.83 | 24 | empty |
| 3 | 122 | 0.39 | 0.74 | 28 | empty |
Interfaces
1 interface between chains.
- B–A · 733 Ų buried · 6 hydrogen bonds · protein-protein
Compared structures
- 4LJL · Structural insights into the unique single-stranded DNA binding mode of DNA processing… · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt O25100
- Elsewhere: RCSB PDB 4LJL · PDBe 4LJL · UniProt O25100
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