MolNFT v1 · #98731 · protein

Crystal structure of hcov-OC43 N-ntd complexed with AMP

4LI4 · Nucleoprotein: “Crystal structure of hcov-OC43 N-ntd complexed with AMP”. X-ray diffraction, 1 ligand (AMP), 2 pockets (best druggability 0.35). MolNFT v1 #98731 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4LI4
Type: protein
Length: 133 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Nucleoprotein
UniProt: Q6SA23
Ligands: AMP
Pockets: 2 · best druggability 0.35

Structure

x-ray diffraction · 1 distinct chain · 5% helix, 20% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Nucleoprotein	protein	133	5% helix, 20% strand	Q6SA23

Ligands and binding sites

AMP · Adenosine monophosphate · ligand · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	76	0.35	0.76	18	AMP
2	59	0.32	0.76	18	empty

Compared structures

4LI4 · Crystal structure of HCoV-OC43 N-NTD complexed with AMP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q6SA23
Elsewhere: RCSB PDB 4LI4 · PDBe 4LI4 · UniProt Q6SA23

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