MolNFT v1 · #98620 · protein
Crystal structure of a putative outer membrane protein, probably involved in nutrient binding (BVU_1254) from bacteroides vulgatus atcc 8482 at 1.42 a resolution
4LER: “Crystal structure of a putative outer membrane protein, probably involved in nutrient binding (BVU_1254) from…”. X-ray diffraction, 1 ligand (CL), 4 pockets (best druggability 0.83). MolNFT v1 #98620 on GenesisL1: 3D structure…
- PDB
- 4LER
- Type
- protein
- Length
- 457 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Putative outer membrane protein, probably involved in nutrient binding
- UniProt
- A6KZT0
- Ligands
- CL
- Pockets
- 4 · best druggability 0.83
Structure
x-ray diffraction · 1 distinct chain · 51% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Putative outer membrane protein, probably involved in nutrient binding | protein | 457 | 51% helix, 5% strand | A6KZT0 |
Ligands and binding sites
- CL · Chloride ion · ion · 3 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 166 | 0.83 | 0.98 | 35 | empty |
| 2 | 143 | 0.51 | 0.79 | 20 | empty |
| 3 | 91 | 0.47 | 0.81 | 21 | CL |
| 4 | 62 | 0.31 | 0.75 | 17 | empty |
Modifications
Observed in the structure: 9 modified (engineered).
Compared structures
- 4LER · Crystal structure of a putative outer membrane protein, probably involved in nutrient… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt A6KZT0
- Elsewhere: RCSB PDB 4LER · PDBe 4LER · UniProt A6KZT0
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