MolNFT v1 · #98589 · protein
Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 5
4LDU: “Crystal structure of the DNA binding domain of arabidopsis thaliana auxin response factor 5”. X-ray diffraction, 1 ligand (CL), 5 pockets (best druggability 0.63). MolNFT v1 #98589 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4LDU
- Type
- protein
- Length
- 336 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Auxin response factor 5
- UniProt
- P93024
- Ligands
- CL
- Pockets
- 5 · best druggability 0.63
Structure
x-ray diffraction · 1 distinct chain · 22% helix, 30% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Auxin response factor 5 | protein | 336 | 22% helix, 30% strand | P93024 |
Ligands and binding sites
- CL · Chloride ion · ion · 2 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
5 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 419 | 0.63 | 0.77 | 41 | empty |
| 2 | 181 | 0.47 | 0.76 | 28 | empty |
| 3 | 94 | 0.45 | 0.79 | 19 | CL |
| 4 | 152 | 0.41 | 0.73 | 27 | empty |
| 5 | 59 | 0.30 | 0.75 | 18 | empty |
Compared structures
- 4LDU · Crystal structure of the DNA binding domain of Arabidopsis thaliana auxin response factor… · the same entry in another collection · chain A against A, TM-score 1.00
- P93024 · AlphaFold monomer V2.0 prediction for auxin response factor 5 (P93024) · a predicted model of the same protein · chain A against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P93024
- Elsewhere: RCSB PDB 4LDU · PDBe 4LDU · UniProt P93024
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.