MolNFT v1 · #98430 · protein
Structure of native rbp from lactococcal phage 1358 (csi derivative)
4L9B · Receptor binding protein: “Structure of native rbp from lactococcal phage 1358 (csi derivative)”. X-ray diffraction, 1 ligand (CS), 2 pockets (best druggability 0.52). MolNFT v1 #98430 on GenesisL1: 3D structure, binding sites and…
- PDB
- 4L9B
- Type
- protein
- Length
- 369 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Receptor binding protein
- UniProt
- D3W0F1
- Ligands
- CS
- Pockets
- 2 · best druggability 0.52
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 43% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Receptor binding protein | protein | 369 | 9% helix, 43% strand | D3W0F1 |
Ligands and binding sites
- CS · Cesium ion · metal · 6 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 227 | 0.52 | 0.76 | 27 | empty |
| 2 | 60 | 0.26 | 0.72 | 18 | CS |
Compared structures
- 4L9B · Structure of native RBP from lactococcal phage 1358 (CsI derivative) · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D3W0F1
- Elsewhere: RCSB PDB 4L9B · PDBe 4L9B · UniProt D3W0F1
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