MolNFT v1 · #98373 · protein

Crystal structure of the archaeal heat-like repeats protein TON_1937 from thermococcus onnurineus NA1

4L7M · Putative uncharacterized protein: “Crystal structure of the archaeal heat-like repeats protein TON_1937 from thermococcus onnurineus NA1”. X-ray diffraction, 3 pockets (best druggability 0.52). MolNFT v1 #98373 on GenesisL1: 3D…

PDB: 4L7M
Type: protein
Length: 522 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Putative uncharacterized protein
UniProt: B6YW62
Pockets: 3 · best druggability 0.52

Structure

x-ray diffraction · 1 distinct chain · 70% helix, 1% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Putative uncharacterized protein	protein	261	70% helix, 1% strand	B6YW62

Ligands and binding sites

GOL · Glycerol · additive · 2 copies · chains B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

3 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	234	0.52	0.76	26	empty
2	126	0.42	0.75	19	empty
3	95	0.35	0.74	15	GOL

Interfaces

1 interface between chains.

A–B · 153 Å² buried · 1 hydrogen bond · protein-protein

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

4L7M · Crystal structure of the archaeal HEAT-like repeats protein TON_1937 from Thermococcus… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B6YW62
Elsewhere: RCSB PDB 4L7M · PDBe 4L7M · UniProt B6YW62

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