MolNFT v1 · #98121 · protein
Crystal structure of the secreted protein HP1454 from the human pathogen helicobacter pylori
4KZS · LPP20 lipofamily protein: “Crystal structure of the secreted protein HP1454 from the human pathogen helicobacter pylori”. X-ray diffraction, 2 pockets (best druggability 0.69). MolNFT v1 #98121 on GenesisL1: 3D structure, binding…
- PDB
- 4KZS
- Type
- protein
- Length
- 242 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- LPP20 lipofamily protein
- UniProt
- K2KM35
- Pockets
- 2 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | LPP20 lipofamily protein | protein | 242 | 44% helix, 16% strand | K2KM35 |
Ligands and binding sites
- 1PE · Pentaethylene glycol · additive
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 94 | 0.69 | 0.93 | 20 | empty |
| 2 | 120 | 0.47 | 0.79 | 15 | empty |
Compared structures
- 4KZS · Crystal structure of the secreted protein HP1454 from the human pathogen Helicobacter… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt K2KM35
- Elsewhere: RCSB PDB 4KZS · PDBe 4KZS · UniProt K2KM35
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