MolNFT v1 · #98094 · protein
Three-dimensional structure of triclinic form of de novo design insertion domain, northeast structural genomics consortium (nesg) target OR327
4KYZ · Designed protein OR327: “Three-dimensional structure of triclinic form of de novo design insertion domain, northeast structural…”. X-ray diffraction, 4 pockets (best druggability 0.75). MolNFT v1 #98094 on GenesisL1: 3D structure…
- PDB
- 4KYZ
- Type
- protein
- Length
- 668 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Designed protein OR327
- Pockets
- 4 · best druggability 0.75
Structure
x-ray diffraction · 1 distinct chain · 44% helix, 38% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C, D | Designed protein OR327 | protein | 167 | 44% helix, 38% strand | — |
Pockets
4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1123 | 0.75 | 0.78 | 89 | empty |
| 2 | 96 | 0.36 | 0.75 | 19 | empty |
| 3 | 73 | 0.33 | 0.76 | 17 | empty |
| 4 | 66 | 0.26 | 0.72 | 19 | empty |
Interfaces
5 interfaces between chains.
- B–C · 693 Ų buried · 8 hydrogen bonds · protein-protein
- A–D · 665 Ų buried · 7 hydrogen bonds · protein-protein
- C–D · 194 Ų buried · 6 hydrogen bonds · protein-protein
- A–B · 186 Ų buried · 3 hydrogen bonds · protein-protein
- B–D · 127 Ų buried · 1 hydrogen bond · protein-protein
Modifications
Observed in the structure: 12 modified (engineered).
Compared structures
- 4KYZ · Three-dimensional structure of triclinic form of de novo design insertion domain… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4KYZ · PDBe 4KYZ
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