MolNFT v1 · #98093 · RNA
Crystal structure of RNA 17-mer uucgguuuugauccgga duplex
4KYY: “Crystal structure of RNA 17-mer uucgguuuugauccgga duplex”. X-ray diffraction, 1 ligand (K), 1 pocket (best druggability 0.45). MolNFT v1 #98093 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4KYY
- Type
- RNA
- Length
- 34 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA 17-mer
- Ligands
- K
- Pockets
- 1 · best druggability 0.45
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA 17-mer | rna | 17 | — | — |
Ligands and binding sites
- K · Potassium ion · metal · 7 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 278 | 0.45 | 0.72 | 24 | K |
Interfaces
1 interface between chains.
- A–B · 803 Ų buried · 89 hydrogen bonds · nucleic-nucleic
Compared structures
- 4KYY · Crystal Structure of RNA 17-mer UUCGGUUUUGAUCCGGA duplex · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4KYY · PDBe 4KYY
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.