MolNFT v1 · #98092 · protein
Crystal structure of ADP-ribose pyrophosphatase mutt from rickettsia felis
4KYX: “Crystal structure of ADP-ribose pyrophosphatase mutt from rickettsia felis”. X-ray diffraction, 2 pockets (best druggability 0.61). MolNFT v1 #98092 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4KYX
- Type
- protein
- Length
- 273 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- ADP-ribose pyrophosphatase mutt
- EC
- 3.6.1.-
- UniProt
- Q4ULX7
- Pockets
- 2 · best druggability 0.61
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 39% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | ADP-ribose pyrophosphatase mutt (EC 3.6.1.-) | protein | 139 | 17% helix, 40% strand | Q4ULX7 |
| B | ADP-ribose pyrophosphatase mutt (EC 3.6.1.-) | protein | 134 | 17% helix, 39% strand | Q4ULX7 |
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 210 | 0.61 | 0.82 | 32 | empty |
| 2 | 217 | 0.56 | 0.78 | 28 | empty |
Interfaces
1 interface between chains.
- A–B · 1148 Ų buried · 10 hydrogen bonds · protein-protein
Compared structures
- 4KYX · Crystal structure of ADP-ribose pyrophosphatase MutT from Rickettsia felis · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q4ULX7
- Elsewhere: RCSB PDB 4KYX · PDBe 4KYX · UniProt Q4ULX7
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