MolNFT v1 · #98086 · protein

Structure of a product bound plant phosphatase

4KYQ · Phosphoglucan phosphatase LSF2, chloroplastic: “Structure of a product bound plant phosphatase”. X-ray diffraction, 2 pockets (best druggability 0.55). MolNFT v1 #98086 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4KYQ
Type: protein
Length: 206 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Phosphoglucan phosphatase LSF2, chloroplastic
EC: 3.1.3.-
UniProt: Q9SRK5
Pockets: 2 · best druggability 0.55

Structure

x-ray diffraction · 1 distinct chain · 50% helix, 12% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Phosphoglucan phosphatase LSF2, chloroplastic (EC 3.1.3.-)	protein	206	50% helix, 12% strand	Q9SRK5

Ligands and binding sites

FLC · Citrate anion · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	137	0.55	0.81	23	FLC
2	67	0.31	0.75	14	empty

Compared structures

4KYQ · Structure of a product bound plant phosphatase · the same entry in another collection · chain A against A, TM-score 1.00
Q9SRK5 · AlphaFold monomer V2.0 prediction for phosphoglucan phosphatase LSF2, chloroplastic… · a predicted model of the same protein · chain A against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q9SRK5
Elsewhere: RCSB PDB 4KYQ · PDBe 4KYQ · UniProt Q9SRK5

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