MolNFT v1 · #97937 · protein
Lactococcus phage 67 ruvc
4KTZ · Ruvc endonuclease: “Lactococcus phage 67 ruvc”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.68). MolNFT v1 #97937 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4KTZ
- Type
- protein
- Length
- 320 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ruvc endonuclease
- UniProt
- Q38242
- Ligands
- MG
- Pockets
- 2 · best druggability 0.68
Structure
x-ray diffraction · 1 distinct chain · 46% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Ruvc endonuclease | protein | 160 | 46% helix, 19% strand | Q38242 |
Ligands and binding sites
- MG · Magnesium ion · metal · 3 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 406 | 0.68 | 0.80 | 45 | MG |
| 2 | 358 | 0.61 | 0.77 | 30 | MG |
Interfaces
1 interface between chains.
- A–B · 774 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 4KTZ · Lactococcus phage 67 RuvC · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38242
- Elsewhere: RCSB PDB 4KTZ · PDBe 4KTZ · UniProt Q38242
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