MolNFT v1 · #97934 · protein
Lactococcus phage 67 ruvc - apo form
4KTW · Ruvc endonuclease: “Lactococcus phage 67 ruvc - apo form”. X-ray diffraction, 2 pockets (best druggability 0.70). MolNFT v1 #97934 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4KTW
- Type
- protein
- Length
- 319 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Ruvc endonuclease
- UniProt
- Q38242
- Pockets
- 2 · best druggability 0.70
Structure
x-ray diffraction · 2 distinct chains · 45% helix, 19% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Ruvc endonuclease | protein | 160 | 45% helix, 19% strand | Q38242 |
| B | Ruvc endonuclease | protein | 159 | 46% helix, 19% strand | Q38242 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 376 | 0.70 | 0.83 | 34 | empty |
| 2 | 271 | 0.55 | 0.77 | 33 | empty |
Interfaces
1 interface between chains.
- A–B · 846 Ų buried · 11 hydrogen bonds · protein-protein
Compared structures
- 4KTW · Lactococcus phage 67 RuvC - apo form · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q38242
- Elsewhere: RCSB PDB 4KTW · PDBe 4KTW · UniProt Q38242
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