MolNFT v1 · #97924 · protein
Crystal structure of C143S xanthomonas campestris olea
4KTM · 3-oxoacyl-[acp] synthase III: “Crystal structure of C143S xanthomonas campestris olea”. X-ray diffraction, 1 ligand (PO4), 6 pockets (best druggability 0.76). MolNFT v1 #97924 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4KTM
- Type
- protein
- Length
- 678 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 3-oxoacyl-[acp] synthase III
- UniProt
- Q8PDX2
- Ligands
- PO4
- Pockets
- 6 · best druggability 0.76
Structure
x-ray diffraction · 2 distinct chains · 44% helix, 26% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 3-oxoacyl-[acp] synthase III | protein | 340 | 44% helix, 25% strand | Q8PDX2 |
| B | 3-oxoacyl-[acp] synthase III | protein | 338 | 43% helix, 26% strand | Q8PDX2 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
6 pockets found on a 1 Å grid, 5 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 524 | 0.76 | 0.83 | 74 | empty |
| 2 | 391 | 0.76 | 0.86 | 50 | PEG |
| 3 | 59 | 0.71 | 0.98 | 19 | empty |
| 4 | 197 | 0.57 | 0.80 | 27 | PEG |
| 5 | 218 | 0.56 | 0.79 | 27 | empty |
Interfaces
1 interface between chains.
- A–B · 2477 Ų buried · 39 hydrogen bonds · protein-protein
Compared structures
- 4KTM · Crystal Structure of C143S Xanthomonas campestris OleA · the same entry in another collection · chain A against A, TM-score 1.00
- Q8PDX2 · AlphaFold monomer V2.0 prediction for acyl-COA:ACYL-CoA alkyltransferase (Q8PDX2) · a predicted model of the same protein · chain B against A, TM-score 0.99
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q8PDX2
- Elsewhere: RCSB PDB 4KTM · PDBe 4KTM · UniProt Q8PDX2
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.