MolNFT v1 · #97817 · protein
ABC transporter, laci family transcriptional regulator from brachyspira murdochii
4KQC · Periplasmic binding PROTEIN/LACI transcriptional regulator: “ABC transporter, laci family transcriptional regulator from brachyspira murdochii”. X-ray diffraction, 1 ligand (NO3), 1 pocket (best druggability 0.70). MolNFT v1 #97817…
- PDB
- 4KQC
- Type
- protein
- Length
- 319 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Periplasmic binding PROTEIN/LACI transcriptional regulator
- UniProt
- D5U661
- Ligands
- NO3
- Pockets
- 1 · best druggability 0.70
Structure
x-ray diffraction · 1 distinct chain · 40% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Periplasmic binding PROTEIN/LACI transcriptional regulator | protein | 319 | 40% helix, 18% strand | D5U661 |
Ligands and binding sites
- NO3 · Nitrate ion · ion · 5 copies · chains A
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 391 | 0.70 | 0.82 | 46 | empty |
Modifications
Observed in the structure: 3 modified (engineered).
Compared structures
- 4KQC · ABC transporter, LacI family transcriptional regulator from Brachyspira murdochii · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt D5U661
- Elsewhere: RCSB PDB 4KQC · PDBe 4KQC · UniProt D5U661
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