MolNFT v1 · #97688 · protein
Crystal structure of cytochrome C6B from synechococcus sp. WH8102
4KMG · Cytochrome C6 (soluble cytochrome F) (cytochrome C553): “Crystal structure of cytochrome C6B from synechococcus sp. WH8102”. X-ray diffraction, 2 ligands (HEC, NA), 1 pocket (best druggability 0.69). MolNFT v1 #97688 on GenesisL1…
- PDB
- 4KMG
- Type
- protein
- Length
- 88 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cytochrome C6 (soluble cytochrome F) (cytochrome C553)
- UniProt
- Q7U624
- Ligands
- HEC, NA
- Pockets
- 1 · best druggability 0.69
Structure
x-ray diffraction · 1 distinct chain · 52% helix, 5% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Cytochrome C6 (soluble cytochrome F) (cytochrome C553) | protein | 88 | 52% helix, 5% strand | Q7U624 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 215 | 0.69 | 0.86 | 29 | HEC |
Modifications
Observed in the structure: 2 cofactor (heme c attachment).
Compared structures
- 4KMG · Crystal structure of cytochrome c6B from Synechococcus sp. WH8102 · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q7U624
- Elsewhere: RCSB PDB 4KMG · PDBe 4KMG · UniProt Q7U624
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.