MolNFT v1 · #9744 · DNA
Solution structure of 2-(PYRIDO[1,2-E]PURIN-4-YL)AMINO-ethanol intercalated in the DNA duplex D(CGATCG)2
1I5V · 5'-D(*CP*GP*AP*TP*CP*G)-3': “Solution structure of 2-(PYRIDO[1,2-E]PURIN-4-YL)AMINO-ethanol intercalated in the DNA duplex D(CGATCG)2”. Solution nmr, 1 ligand (PPZ). MolNFT v1 #9744 on GenesisL1: 3D structure, binding sites and…
- PDB
- 1I5V
- Type
- DNA
- Length
- 12 nucleotides
- Chains
- 2
- Method
- solution nmr
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-D(*CP*GP*AP*TP*CP*G)-3'
- Ligands
- PPZ
Structure
solution nmr · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | 5'-D(*CP*GP*AP*TP*CP*G)-3' | dna | 6 | — | — |
Ligands and binding sites
- PPZ · 2-(pyrido[1,2-e]purin-4-yl)amino-ethanol · ligand · 2 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 281 Ų buried · 28 hydrogen bonds · nucleic-nucleic
Compared structures
- 1I5V · Solution structure of 2-(PYRIDO[1,2-E]PURIN-4-YL)AMINO-ethanol intercalated in the DNA… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 1I5V · PDBe 1I5V
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