MolNFT v1 · #97436 · protein
Crystal structure of TRNA/RRNA methyltransferase yibk from escherichia COLI (target nysgrc-012599)
4KDZ · TRNA (CYTIDINE(34)-2'-O)-methyltransferase: “Crystal structure of TRNA/RRNA methyltransferase yibk from escherichia COLI (target nysgrc-012599)”. X-ray diffraction, 1 pocket (best druggability 0.55). MolNFT v1 #97436 on GenesisL1…
- PDB
- 4KDZ
- Type
- protein
- Length
- 156 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- TRNA (CYTIDINE(34)-2'-O)-methyltransferase
- EC
- 2.1.1.207
- UniProt
- Q1R4Y9
- Pockets
- 1 · best druggability 0.55
Structure
x-ray diffraction · 1 distinct chain · 36% helix, 18% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | TRNA (CYTIDINE(34)-2'-O)-methyltransferase (EC 2.1.1.207) | protein | 156 | 36% helix, 18% strand | Q1R4Y9 |
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 152 | 0.55 | 0.81 | 24 | empty |
Compared structures
- 4KDZ · Crystal structure of tRNA/rRNA methyltransferase YibK from Escherichia coli (Target… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1R4Y9
- Elsewhere: RCSB PDB 4KDZ · PDBe 4KDZ · UniProt Q1R4Y9
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