MolNFT v1 · #97351 · protein

Crystal structure of MYCP1 from mycobacterium smegmatis

4KB5 · Membrane-anchored mycosin MYCP1: “Crystal structure of MYCP1 from mycobacterium smegmatis”. X-ray diffraction, 4 pockets (best druggability 0.70). MolNFT v1 #97351 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4KB5
Type: protein
Length: 386 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Membrane-anchored mycosin MYCP1
UniProt: A0QNL1
Pockets: 4 · best druggability 0.70

Structure

x-ray diffraction · 1 distinct chain · 24% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Membrane-anchored mycosin MYCP1	protein	386	24% helix, 18% strand	A0QNL1

Ligands and binding sites

GOL · Glycerol · additive · 10 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	707	0.70	0.78	63	empty
2	182	0.45	0.74	20	empty
3	111	0.39	0.75	23	empty
4	80	0.35	0.75	20	empty

Modifications

Observed in the structure: 2 disulfide (disulfide).

Compared structures

4KB5 · Crystal structure of MycP1 from Mycobacterium smegmatis · the same entry in another collection · chain A against A, TM-score 1.00
A0QNL1 · AlphaFold monomer V2.0 prediction for mycosin-1 (A0QNL1) · a predicted model of the same protein · chain A against A, TM-score 0.98

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A0QNL1
Elsewhere: RCSB PDB 4KB5 · PDBe 4KB5 · UniProt A0QNL1

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