MolNFT v1 · #97196 · protein

Crystal structure of the full-length japanese encephalitis virus NS5

4K6M · Polyprotein: “Crystal structure of the full-length japanese encephalitis virus NS5”. X-ray diffraction, 3 ligands (SAH, ZN, SO4), 20 pockets (best druggability 0.79). MolNFT v1 #97196 on GenesisL1: 3D structure, binding sites and…

PDB: 4K6M
Type: protein
Length: 1,776 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Polyprotein
UniProt: Q5NT71
Ligands: SAH, ZN, SO4
Pockets: 20 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 43% helix, 13% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Polyprotein	protein	888	43% helix, 13% strand	Q5NT71

Ligands and binding sites

SAH · S-adenosyl-L-homocysteine · ligand · 2 copies · chains A, B
ZN · Zinc ion · metal · 4 copies · chains A, B
SO4 · Sulfate ion · ion · 18 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

20 pockets found on a 1 Å grid, 7 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	881	0.79	0.82	83	SAH, SO4
2	1041	0.78	0.80	94	SAH, SO4
3	1163	0.78	0.80	106	SO4
4	1198	0.78	0.79	97	SO4
5	387	0.69	0.81	36	empty

Interfaces

1 interface between chains.

A–B · 1689 Å² buried · 15 hydrogen bonds · protein-protein

Compared structures

4K6M · Crystal Structure of the full-length Japanese encephalitis virus NS5 · the same entry in another collection · chain B against B, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5NT71
Elsewhere: RCSB PDB 4K6M · PDBe 4K6M · UniProt Q5NT71

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.