MolNFT v1 · #97182 · protein

Structure of a novel GH10 endoxylanase retrieved from sugarcane soil metagenome

4K68 · GH10 xylanase: “Structure of a novel GH10 endoxylanase retrieved from sugarcane soil metagenome”. X-ray diffraction, 4 pockets (best druggability 0.73). MolNFT v1 #97182 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4K68
Type: protein
Length: 682 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: GH10 xylanase
Pockets: 4 · best druggability 0.73

Structure

x-ray diffraction · 2 distinct chains · 43% helix, 18% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	GH10 xylanase	protein	337	42% helix, 18% strand	—
B	GH10 xylanase	protein	345	44% helix, 18% strand	—

Ligands and binding sites

GOL · Glycerol · additive · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	962	0.73	0.77	78	empty
2	132	0.49	0.79	25	empty
3	198	0.48	0.75	27	empty
4	93	0.35	0.74	17	GOL

Interfaces

1 interface between chains.

A–B · 504 Å² buried · 3 hydrogen bonds · protein-protein

Compared structures

4K68 · Structure of a novel GH10 endoxylanase retrieved from sugarcane soil metagenome · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Elsewhere: RCSB PDB 4K68 · PDBe 4K68

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