MolNFT v1 · #97165 · protein

Crystal structure of calb mutant dglm from candida antarctica

4K5Q · Lipase B: “Crystal structure of calb mutant dglm from candida antarctica”. X-ray diffraction, 1 pocket (best druggability 0.56). MolNFT v1 #97165 on GenesisL1: 3D structure, binding sites and pockets in GL1X.

PDB: 4K5Q
Type: protein
Length: 317 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Lipase B
EC: 3.1.1.3
UniProt: P41365
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 1 distinct chain · 35% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Lipase B (EC 3.1.1.3)	protein	317	35% helix, 16% strand	P41365

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	192	0.56	0.79	26	empty

Modifications

Observed in the structure: 3 disulfide (disulfide).

Compared structures

4K5Q · Crystal structure of CALB mutant DGLM from Candida antarctica · the same entry in another collection · chain A against A, TM-score 1.00
P41365 · AlphaFold monomer V2.0 prediction for lipase B (P41365) · a predicted model of the same protein · chain A against A, TM-score 0.99

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P41365
Elsewhere: RCSB PDB 4K5Q · PDBe 4K5Q · UniProt P41365

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