MolNFT v1 · #97150 · protein
Co-crystallization with conformation-specific designed ankyrin repeat proteins explains the conformational flexibility of BCL-W
4K5B · Apoptosis regulator BCL-W: “Co-crystallization with conformation-specific designed ankyrin repeat proteins explains the conformational…”. X-ray diffraction, 4 pockets (best druggability 0.68). MolNFT v1 #97150 on GenesisL1: 3D…
- PDB
- 4K5B
- Type
- protein
- Length
- 601 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Apoptosis regulator BCL-W; BCL-2-like protein 2
- UniProt
- Q1RMX3
- Pockets
- 4 · best druggability 0.68
Structure
x-ray diffraction · 4 distinct chains · 64% helix, 1% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Apoptosis regulator BCL-W | protein | 156 | 55% helix, 1% strand | — |
| B | Apoptosis regulator BCL-W | protein | 156 | 55% helix, 1% strand | — |
| C | BCL-2-like protein 2 | protein | 145 | 72% helix, 0% strand | Q1RMX3 |
| D | BCL-2-like protein 2 | protein | 144 | 74% helix, 0% strand | Q1RMX3 |
Pockets
4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 646 | 0.68 | 0.77 | 56 | empty |
| 2 | 253 | 0.61 | 0.81 | 41 | empty |
| 3 | 149 | 0.48 | 0.78 | 26 | empty |
| 4 | 51 | 0.34 | 0.79 | 13 | empty |
Interfaces
5 interfaces between chains.
- B–C · 1087 Ų buried · 10 hydrogen bonds · protein-protein
- A–D · 1067 Ų buried · 8 hydrogen bonds · protein-protein
- A–C · 438 Ų buried · 9 hydrogen bonds · protein-protein
- C–D · 143 Ų buried · 1 hydrogen bond · protein-protein
- A–B · 121 Ų buried · 0 hydrogen bonds · protein-protein
Compared structures
- 4K5B · Co-crystallization with conformation-specific designed ankyrin repeat proteins explains… · the same entry in another collection · chain B against B, TM-score 1.00
- Q1RMX3 · AlphaFold monomer V2.0 prediction for BCL-2-like protein 2 (Q1RMX3) · a predicted model of the same protein · chain C against A, TM-score 0.97
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q1RMX3
- Elsewhere: RCSB PDB 4K5B · PDBe 4K5B · UniProt Q1RMX3
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.