MolNFT v1 · #96988 · protein
Crystal structure of a DUF1343 family protein (BF0371) from bacteroides fragilis nctc 9343 at 1.65 a resolution
4K05 · Conserved hypothetical exported protein: “Crystal structure of a DUF1343 family protein (BF0371) from bacteroides fragilis nctc 9343 at 1.65 a…”. X-ray diffraction, 1 ligand (K), 3 pockets (best druggability 0.78). MolNFT v1 #96988…
- PDB
- 4K05
- Type
- protein
- Length
- 768 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Conserved hypothetical exported protein
- UniProt
- Q5LI85
- Ligands
- K
- Pockets
- 3 · best druggability 0.78
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 16% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Conserved hypothetical exported protein | protein | 384 | 35% helix, 16% strand | Q5LI85 |
Ligands and binding sites
- K · Potassium ion · metal · 3 copies · chains A, B
- FMT · Formic acid · additive · chains B
- 1PE · Pentaethylene glycol · additive · chains B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
3 pockets found on a 1 Å grid, 3 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 890 | 0.78 | 0.81 | 85 | empty |
| 2 | 686 | 0.75 | 0.81 | 84 | empty |
| 3 | 674 | 0.71 | 0.78 | 84 | empty |
Interfaces
1 interface between chains.
- A–B · 1525 Ų buried · 8 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 24 modified (engineered).
Compared structures
- 4K05 · Crystal structure of a DUF1343 family protein (BF0371) from Bacteroides fragilis NCTC… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5LI85
- Elsewhere: RCSB PDB 4K05 · PDBe 4K05 · UniProt Q5LI85
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.