MolNFT v1 · #96915 · protein
Crystal structure of polyprenyl synthase PATL_3739 (target efi-509195) from pseudoalteromonas atlantica
4JXY · Trans-hexaprenyltranstransferase: “Crystal structure of polyprenyl synthase PATL_3739 (target efi-509195) from pseudoalteromonas atlantica”. X-ray diffraction, 2 ligands (GUA, PO4), 2 pockets (best druggability 0.60). MolNFT v1…
- PDB
- 4JXY
- Type
- protein
- Length
- 311 residues
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Trans-hexaprenyltranstransferase
- EC
- 2.5.1.30
- UniProt
- Q15PE7
- Ligands
- GUA, PO4
- Pockets
- 2 · best druggability 0.60
Structure
x-ray diffraction · 1 distinct chain · 79% helix, 0% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Trans-hexaprenyltranstransferase (EC 2.5.1.30) | protein | 311 | 79% helix, 0% strand | Q15PE7 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 273 | 0.60 | 0.79 | 36 | empty |
| 2 | 60 | 0.30 | 0.74 | 14 | empty |
Compared structures
- 4JXY · CRYSTAL STRUCTURE OF POLYPRENYL SYNTHASE PATL_3739 (TARGET EFI-509195) FROM… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q15PE7
- Elsewhere: RCSB PDB 4JXY · PDBe 4JXY · UniProt Q15PE7
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