MolNFT v1 · #96886 · protein
Crystal structure of a two domain protein with unknown function (BF3416) from bacteroides fragilis nctc 9343 at 2.90 a resolution
4JX0 · Hypothetical protein: “Crystal structure of a two domain protein with unknown function (BF3416) from bacteroides fragilis nctc 9343…”. X-ray diffraction, 1 ligand (MG), 2 pockets (best druggability 0.42). MolNFT v1 #96886 on…
- PDB
- 4JX0
- Type
- protein
- Length
- 604 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Hypothetical protein
- UniProt
- Q5L9W9
- Ligands
- MG
- Pockets
- 2 · best druggability 0.42
Structure
x-ray diffraction · 1 distinct chain · 9% helix, 48% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | Hypothetical protein | protein | 302 | 9% helix, 48% strand | Q5L9W9 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 128 | 0.42 | 0.76 | 24 | empty |
| 2 | 52 | 0.26 | 0.74 | 14 | empty |
Interfaces
1 interface between chains.
- A–B · 423 Ų buried · 7 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 18 modified (engineered).
Compared structures
- 4JX0 · Crystal structure of a two domain protein with unknown function (BF3416) from Bacteroides… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt Q5L9W9
- Elsewhere: RCSB PDB 4JX0 · PDBe 4JX0 · UniProt Q5L9W9
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