MolNFT v1 · #96701 · RNA
Crystal structure of the parallel double-stranded helix of POLY(A) RNA
4JRD · RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3'): “Crystal structure of the parallel double-stranded helix of POLY(A) RNA”. X-ray diffraction, 1 ligand (NH4). MolNFT v1 #96701 on GenesisL1: 3D structure, binding sites and pockets in…
- PDB
- 4JRD
- Type
- RNA
- Length
- 22 nucleotides
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
- Ligands
- NH4
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3') | rna | 11 | — | — |
Ligands and binding sites
- NH4 · Ammonium ion · ion · 18 copies · chains A, B
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Interfaces
1 interface between chains.
- A–B · 938 Ų buried · 46 hydrogen bonds · nucleic-nucleic
Compared structures
- 4JRD · Crystal structure of the parallel double-stranded helix of poly(A) RNA · the same entry in another collection · chain B against B, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4JRD · PDBe 4JRD
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