MolNFT v1 · #96620 · protein

Crystal structure of TT0495 protein from thermus thermophilus HB8

4JP2 · 2-deoxy-D-gluconate 3-dehydrogenase: “Crystal structure of TT0495 protein from thermus thermophilus HB8”. X-ray diffraction, 1 pocket (best druggability 0.79). MolNFT v1 #96620 on GenesisL1: 3D structure, binding sites and pockets…

PDB: 4JP2
Type: protein
Length: 239 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: 2-deoxy-D-gluconate 3-dehydrogenase
UniProt: Q53W82
Pockets: 1 · best druggability 0.79

Structure

x-ray diffraction · 1 distinct chain · 47% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	2-deoxy-D-gluconate 3-dehydrogenase	protein	239	47% helix, 16% strand	Q53W82

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	351	0.79	0.89	47	empty

Modifications

Observed in the structure: 3 modified (engineered).

Compared structures

4JP2 · Crystal Structure of TT0495 protein from Thermus thermophilus HB8 · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q53W82
Elsewhere: RCSB PDB 4JP2 · PDBe 4JP2 · UniProt Q53W82

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