MolNFT v1 · #96528 · protein

Crystal structure of cytochrome C peroxidase W191G-gateless in complex with 2,6-diaminopyridine

4JM8: “Crystal structure of cytochrome C peroxidase W191G-gateless in complex with 2,6-diaminopyridine”. X-ray diffraction, 3 ligands (HEM, 26D, PO4), 2 pockets (best druggability 0.82). MolNFT v1 #96528 on GenesisL1: 3D structure, binding…

PDB: 4JM8
Type: protein
Length: 289 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Cytochrome C peroxidase
EC: 1.11.1.5
UniProt: B3LRE1
Ligands: HEM, 26D, PO4
Pockets: 2 · best druggability 0.82

Structure

x-ray diffraction · 1 distinct chain · 51% helix, 10% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Cytochrome C peroxidase (EC 1.11.1.5)	protein	289	51% helix, 10% strand	B3LRE1

Ligands and binding sites

HEM · Protoporphyrin IX containing Fe · ligand · chains A
26D · Pyridine-2,6-diamine · ligand · chains A
PO4 · Phosphate ion · ion · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	413	0.82	0.90	56	HEM, 26D
2	109	0.43	0.78	20	PO4

Compared structures

4JM8 · Crystal structure of Cytochrome C Peroxidase W191G-Gateless in complex with… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt B3LRE1
Elsewhere: RCSB PDB 4JM8 · PDBe 4JM8 · UniProt B3LRE1

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