MolNFT v1 · #96425 · protein

Crystal structure of a DUF1343 family protein (BF0379) from bacteroides fragilis nctc 9343 at 1.30 a resolution

4JJA · Hypothetical protein: “Crystal structure of a DUF1343 family protein (BF0379) from bacteroides fragilis nctc 9343 at 1.30 a…”. X-ray diffraction, 1 ligand (CL), 2 pockets (best druggability 0.39). MolNFT v1 #96425 on GenesisL1: 3D…

PDB: 4JJA
Type: protein
Length: 353 residues
Chains: 1
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Hypothetical protein
UniProt: Q5LI79
Ligands: CL
Pockets: 2 · best druggability 0.39

Structure

x-ray diffraction · 1 distinct chain · 34% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	Hypothetical protein	protein	353	34% helix, 16% strand	Q5LI79

Ligands and binding sites

CL · Chloride ion · ion · chains A
GOL · Glycerol · additive · 5 copies · chains A

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	122	0.39	0.74	21	GOL, CL
2	51	0.25	0.73	14	empty

Modifications

Observed in the structure: 12 modified (engineered).

Compared structures

4JJA · Crystal structure of a DUF1343 family protein (BF0379) from Bacteroides fragilis NCTC… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q5LI79
Elsewhere: RCSB PDB 4JJA · PDBe 4JJA · UniProt Q5LI79

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