MolNFT v1 · #96417 · protein
High resolution structure of a C-terminal fragment of the T4 phage GP5 beta-helix
4JJ2 · Tail-associated lysozyme: “High resolution structure of a C-terminal fragment of the T4 phage GP5 beta-helix”. X-ray diffraction, 4 ligands (ELA, PLM, STE), 1 pocket (best druggability 0.85). MolNFT v1 #96417 on GenesisL1: 3D…
- PDB
- 4JJ2
- Type
- protein
- Length
- 276 residues
- Chains
- 3
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Tail-associated lysozyme
- EC
- 3.2.1.17
- UniProt
- P16009
- Ligands
- ELA, PLM, STE, MG
- Pockets
- 1 · best druggability 0.85
Structure
x-ray diffraction · 1 distinct chain · 0% helix, 66% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B, C | Tail-associated lysozyme (EC 3.2.1.17) | protein | 92 | 0% helix, 66% strand | P16009 |
Ligands and binding sites
- ELA · 9-octadecenoic acid · ligand · chains A, B, C
- PLM · Palmitic acid · ligand · chains A, B, C
- STE · Stearic acid · ligand · chains A, B, C
- MG · Magnesium ion · metal · chains A, B, C
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 1069 | 0.85 | 0.85 | 75 | ELA, PLM, STE |
Interfaces
3 interfaces between chains.
- B–C · 3719 Ų buried · 108 hydrogen bonds · protein-protein
- A–B · 3693 Ų buried · 111 hydrogen bonds · protein-protein
- A–C · 3680 Ų buried · 105 hydrogen bonds · protein-protein
Compared structures
- 4JJ2 · High resolution structure of a C-terminal fragment of the T4 phage gp5 beta-helix · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P16009
- Elsewhere: RCSB PDB 4JJ2 · PDBe 4JJ2 · UniProt P16009
GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.