MolNFT v1 · #96416 · protein
Crystal structure of mamp
4JJ0: “Crystal structure of mamp”. X-ray diffraction, 1 ligand (HEC), 2 pockets (best druggability 0.51). MolNFT v1 #96416 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4JJ0
- Type
- protein
- Length
- 361 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Mamp
- Ligands
- HEC
- Pockets
- 2 · best druggability 0.51
Structure
x-ray diffraction · 2 distinct chains · 17% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | Mamp | protein | 181 | 17% helix, 27% strand | — |
| B | Mamp | protein | 180 | 18% helix, 28% strand | — |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
2 pockets found on a 1 Å grid, 1 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 203 | 0.51 | 0.76 | 27 | HEC |
| 2 | 177 | 0.47 | 0.76 | 27 | HEC |
Interfaces
1 interface between chains.
- A–B · 303 Ų buried · 2 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 cofactor (heme c attachment).
Compared structures
- 4JJ0 · Crystal structure of MamP · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4JJ0 · PDBe 4JJ0
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