MolNFT v1 · #96414 · RNA
RNA three-way junction stabilized by a supramolecular di-IRON(II) cylinder drug
4JIY · 5'-(cguacg)-3': “RNA three-way junction stabilized by a supramolecular di-IRON(II) cylinder drug”. X-ray diffraction, 2 ligands (NPM, FE2). MolNFT v1 #96414 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4JIY
- Type
- RNA
- Length
- 6 nucleotides
- Chains
- 1
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- 5'-(cguacg)-3'
- Ligands
- NPM, FE2
Structure
x-ray diffraction · 1 distinct chain.
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A | 5'-(cguacg)-3' | rna | 6 | — | — |
Ligands and binding sites
- NPM · N-[(1E)-pyridin-2-ylmethylene]-N-[4-(4-{[(1E)-pyridin-2-ylmethylene]amino}benzyl)phenyl]amine · ligand · 2 copies · chains A
- FE2 · Fe (II) ion · metal · 4 copies
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Compared structures
- 4JIY · RNA three-way junction stabilized by a supramolecular di-iron(II) cylinder drug · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Elsewhere: RCSB PDB 4JIY · PDBe 4JIY
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