MolNFT v1 · #95954 · protein

Room temperature crystal structure of a RNA binding motif protein 39 (RBM39) from mus musculus at 1.11 a resolution

4J5O · RNA-binding protein 39: “Room temperature crystal structure of a RNA binding motif protein 39 (RBM39) from mus musculus at 1.11 a…”. X-ray diffraction, 1 pocket (best druggability 0.56). MolNFT v1 #95954 on GenesisL1: 3D structure…

PDB: 4J5O
Type: protein
Length: 220 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: RNA-binding protein 39
UniProt: Q8VH51
Pockets: 1 · best druggability 0.56

Structure

x-ray diffraction · 2 distinct chains · 33% helix, 19% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	RNA-binding protein 39	protein	111	32% helix, 19% strand	Q8VH51
B	RNA-binding protein 39	protein	109	35% helix, 19% strand	Q8VH51

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	204	0.56	0.79	24	empty

Interfaces

1 interface between chains.

A–B · 794 Å² buried · 8 hydrogen bonds · protein-protein

Compared structures

4J5O · Room temperature crystal structure of a RNA binding motif protein 39 (Rbm39) from Mus… · the same entry in another collection · chain A against A, TM-score 1.00
Q8VH51 · AlphaFold monomer V2.0 prediction for RNA-binding protein 39 (Q8VH51) · a predicted model of the same protein · chain B against A, TM-score 0.97

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt Q8VH51
Elsewhere: RCSB PDB 4J5O · PDBe 4J5O · UniProt Q8VH51

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