MolNFT v1 · #95911 · protein
Structure of P51G cyanovirin-N swapped tetramer in the C2 space group
4J4G: “Structure of P51G cyanovirin-N swapped tetramer in the C2 space group”. X-ray diffraction, 2 pockets (best druggability 0.40). MolNFT v1 #95911 on GenesisL1: 3D structure, binding sites and pockets in GL1X.
- PDB
- 4J4G
- Type
- protein
- Length
- 404 residues
- Chains
- 4
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- Cyanovirin-N
- UniProt
- P81180
- Pockets
- 2 · best druggability 0.40
Structure
x-ray diffraction · 1 distinct chain · 13% helix, 57% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, C, B, D | Cyanovirin-N | protein | 101 | 13% helix, 57% strand | P81180 |
Pockets
2 pockets found on a 1 Å grid, 0 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 178 | 0.40 | 0.73 | 29 | empty |
| 2 | 119 | 0.36 | 0.73 | 21 | empty |
Interfaces
6 interfaces between chains.
- B–D · 2227 Ų buried · 48 hydrogen bonds · protein-protein
- A–C · 2203 Ų buried · 40 hydrogen bonds · protein-protein
- A–B · 1663 Ų buried · 28 hydrogen bonds · protein-protein
- C–D · 1601 Ų buried · 26 hydrogen bonds · protein-protein
- C–B · 1331 Ų buried · 32 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 8 disulfide (disulfide).
Compared structures
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt P81180
- Elsewhere: RCSB PDB 4J4G · PDBe 4J4G · UniProt P81180
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