MolNFT v1 · #95669 · protein

Crystal structure of a STT7 homolog from micromonas algae in complex with ADP

4IX4 · MSSTT7D protein: “Crystal structure of a STT7 homolog from micromonas algae in complex with ADP”. X-ray diffraction, 2 ligands (ADP, MG), 4 pockets (best druggability 0.84). MolNFT v1 #95669 on GenesisL1: 3D structure, binding sites…

PDB: 4IX4
Type: protein
Length: 696 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: MSSTT7D protein
UniProt: C1EBN1
Ligands: ADP, MG
Pockets: 4 · best druggability 0.84

Structure

x-ray diffraction · 2 distinct chains · 41% helix, 16% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A	MSSTT7D protein	protein	346	41% helix, 15% strand	C1EBN1
B	MSSTT7D protein	protein	350	40% helix, 16% strand	C1EBN1

Ligands and binding sites

ADP · Adenosine-5'-diphosphate · ligand · 2 copies · chains A, B
MG · Magnesium ion · metal · 3 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

4 pockets found on a 1 Å grid, 2 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	945	0.84	0.85	124	ADP, MG
2	101	0.51	0.83	21	MG
3	56	0.41	0.82	16	empty
4	58	0.34	0.78	22	empty

Interfaces

1 interface between chains.

A–B · 837 Å² buried · 9 hydrogen bonds · protein-protein

Compared structures

4IX4 · Crystal structure of a Stt7 homolog from Micromonas algae in complex with ADP · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt C1EBN1
Elsewhere: RCSB PDB 4IX4 · PDBe 4IX4 · UniProt C1EBN1

GL1X is a live explorer of the GenesisL1 blockchain. Turn on JavaScript for search, charts and interactive views.