MolNFT v1 · #95370 · protein
Crystal structure of the AVGLUR1 ligand binding domain complex with methionine at 1.6 ångström resolution
4IO6: “Crystal structure of the AVGLUR1 ligand binding domain complex with methionine at 1.6 ångström resolution”. X-ray diffraction, 2 ligands (MET, CL), 4 pockets (best druggability 0.76). MolNFT v1 #95370 on GenesisL1: 3D structure…
- PDB
- 4IO6
- Type
- protein
- Length
- 486 residues
- Chains
- 2
- Method
- x-ray diffraction
- Collection
- MolNFT v1 / PDB
- Contract
- 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
- Owner
- 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
- Molecule
- AVGLUR1 ligand binding domain
- UniProt
- E9P5T5
- Ligands
- MET, CL
- Pockets
- 4 · best druggability 0.76
Structure
x-ray diffraction · 1 distinct chain · 35% helix, 27% strand (DSSP).
| Chain | Molecule | Type | Residues | Secondary structure | UniProt |
|---|---|---|---|---|---|
| A, B | AVGLUR1 ligand binding domain | protein | 243 | 35% helix, 27% strand | E9P5T5 |
Ligands and binding sites
Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.
Pockets
4 pockets found on a 1 Å grid, 4 with a druggability of 0.5 or more.
| Volume (ų) | Druggability | Buriedness | Lining residues | Inside | |
|---|---|---|---|---|---|
| 1 | 268 | 0.76 | 0.89 | 46 | CL |
| 2 | 594 | 0.74 | 0.81 | 88 | empty |
| 3 | 167 | 0.56 | 0.81 | 27 | empty |
| 4 | 160 | 0.56 | 0.81 | 25 | empty |
Interfaces
1 interface between chains.
- A–B · 1231 Ų buried · 18 hydrogen bonds · protein-protein
Modifications
Observed in the structure: 2 disulfide (disulfide).
Compared structures
- 4IO6 · Crystal Structure of the AvGluR1 ligand binding domain complex with methionine at 1.6… · the same entry in another collection · chain A against A, TM-score 1.00
Analyse
- Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
- Every structure of UniProt E9P5T5
- Elsewhere: RCSB PDB 4IO6 · PDBe 4IO6 · UniProt E9P5T5
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