MolNFT v1 · #94990 · protein

Crystal structure of a DUF4738 family protein (BACOVA_05496) from bacteroides ovatus atcc 8483 at 2.15 a resolution

4ID2 · Uncharacterized protein: “Crystal structure of a DUF4738 family protein (BACOVA_05496) from bacteroides ovatus atcc 8483 at 2.15 a…”. X-ray diffraction, 1 ligand (SO4), 1 pocket (best druggability 0.78). MolNFT v1 #94990 on…

PDB: 4ID2
Type: protein
Length: 272 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Uncharacterized protein
UniProt: A7M5V0
Ligands: SO4
Pockets: 1 · best druggability 0.78

Structure

x-ray diffraction · 1 distinct chain · 7% helix, 54% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Uncharacterized protein	protein	136	7% helix, 54% strand	A7M5V0

Ligands and binding sites

SO4 · Sulfate ion · ion · chains A
EDO · 1,2-ethanediol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 1 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	1174	0.78	0.79	116	EDO

Interfaces

1 interface between chains.

A–B · 860 Å² buried · 9 hydrogen bonds · protein-protein

Modifications

Observed in the structure: 6 modified (engineered).

Compared structures

4ID2 · Crystal structure of a DUF4738 family protein (BACOVA_05496) from Bacteroides ovatus ATCC… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt A7M5V0
Elsewhere: RCSB PDB 4ID2 · PDBe 4ID2 · UniProt A7M5V0

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