MolNFT v1 · #94967 · protein

Crystal structure of a C-terminal truncated form of the matrix subunit (P15) of feline immunodeficiency virus (fiv)

4ICA · Matrix protein P15: “Crystal structure of a C-terminal truncated form of the matrix subunit (P15) of feline immunodeficiency virus…”. X-ray diffraction, 1 pocket (best druggability 0.46). MolNFT v1 #94967 on GenesisL1: 3D structure…

PDB: 4ICA
Type: protein
Length: 238 residues
Chains: 2
Method: x-ray diffraction
Collection: MolNFT v1 / PDB
Contract: 0xDE3723766Bc32dcACD03C17BaA400A7B36837Eba
Owner: 0x3396CDB397284571d12822B4ae1189a8E22AAAAA
Molecule: Matrix protein P15
UniProt: P16087
Pockets: 1 · best druggability 0.46

Structure

x-ray diffraction · 1 distinct chain · 61% helix, 3% strand (DSSP).

Chain	Molecule	Type	Residues	Secondary structure	UniProt
A, B	Matrix protein P15	protein	119	61% helix, 3% strand	P16087

Ligands and binding sites

7PE · 2-(2-(2-(2-(2-(2-ethoxyethoxy)ethoxy)ethoxy)ethoxy) ethoxy)ethanol · additive · 2 copies · chains A, B

Binding sites are the residues within 4.5 Å of a ligand's heavy atoms.

Pockets

1 pocket found on a 1 Å grid, 0 with a druggability of 0.5 or more.

Pocket	Volume (Å³)	Druggability	Buriedness	Lining residues	Inside
1	228	0.46	0.73	32	empty

Interfaces

1 interface between chains.

A–B · 171 Å² buried · 4 hydrogen bonds · protein-protein

Compared structures

4ICA · Crystal structure of a C-terminal truncated form of the matrix subunit (p15) of Feline… · the same entry in another collection · chain A against A, TM-score 1.00

Analyse

Open in the research workbench: secondary structure, accessibility, pockets, interfaces, conservation, variants, modifications, peptides and crosslinks on the 3D structure
Every structure of UniProt P16087
Elsewhere: RCSB PDB 4ICA · PDBe 4ICA · UniProt P16087

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